KBCommons - homoSapiens
SNPViz



Step 1: Choose Genome Version:
Step 2: Choose Dataset
Step 3: Choose Samples
Step 4: Enter Range of Positions
Chromosome:
Starting position:
Ending position:
Step 5: SNPs Options
Step 6: Clustering Method and Color Scheme
Clustering Method:
Color Scheme:
Step 7: Coloring phenotype (optional)
Phenotype Color (template)
Only visualize the PIs with phenotypes
Accuracies Parameters:
Set Ref as MUT
Please assign WT phenotype
Please assign MUT phenotype
Filter Accuracy Realistic by Range - Start: End:
Step 8: Filtering by p-value (optional)
Filter SNPs by p-value range (example)
Parameters:
P-value range - Lowest: Highest:
Only visualize SNPs with p-value