Genomic Variations Explorer

Promoter Search

Search by Gene IDs

Gene IDs:
 (eg Os01g0120800 Os07g0446000 Os07g0264000 )

Upstream length (bp): (eg 2000)

Search by Binding TFs

Binding TFs:
 (eg Os01g0128000 Os01g0165000 Os01g0169400 )

Gene Binding Chromosome: chr01chr02chr03chr04chr05chr06chr07chr08chr09chr10chr11chr12

Upstream length (bp): (eg 2000)

Copy Number Variation Search

Search by Gene IDs

Gene IDs:  (eg Os01g0120800 Os07g0446000 Os07g0264000 )

Data Option: Individual Hits Consensus Regions

Search By Accession and Copy Numbers

Accession:  (eg B001 )

Copy Numbers:
(eg CN0 CN1 CN2 CN3 CN4 CN5 CN6 CN7 CN8)

Data Option: Individual Hits Consensus Regions

Search By Chromosome and Region

Chromosome:  (eg chr10 )

Starting Position:  (eg 150001 )

Ending Position:  (eg 250000 )

Data Option: Individual Hits Consensus Regions

If you use the Genomic Variations Explorer in your work, please cite:

Chan YO, Biova J, Mahmood A, Dietz N, Bilyeu K, Škrabišová M, Joshi T: Genomic Variations Explorer (GenVarX): A Toolset for Annotating Promoter and CNV Regions Using Genotypic and Phenotypic Differences. Frontiers in Genetics 2023, In Press.