Ptrichocarpa-KB

SNPViz

Search by Gene IDs

Step 1: Choose Genome Version:

Step 2: Choose Dataset

Step 3: Choose Samples
{{sample_name}}

Step 4: Enter Range of Positions

Chromosome:

Starting position:

Ending position:

Step 5: SNPs Options

Step 6: Clustering Method and Color Scheme

Clustering Method:

Color Scheme:

Step 7: Coloring phenotype (optional)

Phenotype Color (template)

Only visualize the PIs with phenotypes

Accuracies Parameters:

Set Ref as MUT

Please assign WT phenotype

Please assign MUT phenotype

Filter Accuracy Realistic by Range - Start: End:

Step 8: Filtering by p-value (optional)

Filter SNPs by p-value range (example)

Parameters:

P-value range - Lowest: Highest:

Only visualize SNPs with p-value

SNPViz