KBCommons - Zmays
Login
Sign Up
Home
Search
Genes
miRNA
SNP
Metabolite
Trait
Browse
Differential Expression
In Silico Breeding Program
Research Data Portal
CCLE
MSPHL
Patient Data Portal
TCGA
Endometriosis
MOCARE
In Silico Breeding Program
Gene Family
Tools
Pathway Viewer
PCA
Multiple Sequence Alignment
MotifSampler Search with WebLogo
Blast
Phylogeny
Scatter Plot
Heatmap and Hierarchical Clustering
SNPViz
Allele Catalog Tool
Genomic Variations Explorer
Data Files
Download Data
Workflow
FASTQC
Alignment
RNA-Seq
PGen
CNV
Methylation
Information
Data Source
Organism:
Zmays
Genome version:
Choose genome version
AGPv2_GM_5b
AGPv3_GM_6a
AGPv4_37
Enter Sequence (raw or fasta) :
Blast with protein database
BlastP (Protein Vs Protein Database)
BlastX (Translated Query Vs Protein Database)
Protein Database :
Choose protein database
AGPv2_GM_5b_protein.fa
AGPv3_GM_6a_protein.fa
AGPv4_37_protein.fa
E-value threshold :
0.0001
0.001
0.01
1
10
100
1000
Show max hits :
1
5
10
25
50
100
ALL
Blast with nucleotide or translated database
BlastN (Nucleotide Vs Nucleotide Database)
TBlastX (Translated Query Vs Translated Database)
TBlastN (Protein Query Vs Translated Database)
Nucleotide Database :
Choose nucleotide database
AGPv2_GM_5b_cds.fa
AGPv2_GM_5b_cdna.fa
AGPv2_GM_5b_genome.fa
AGPv3_GM_6a_cds.fa
AGPv3_GM_6a_cdna.fa
AGPv3_GM_6a_genome.fa
AGPv4_37_cds.fa
AGPv4_37_cdna.fa
AGPv4_37_genome.fa
Submit
Clear