3D Omics Studio
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Analysis & Results
2D Volcano
Differential Expression
Select the organism, gene version, data type, dataset and method
Setup filtering parameters
Fold change method:
log2(x):
ln(x):
x:
Absolute log value:
Filter Value:
p-value
q-value
p-value
Analysis Options:
Both
Up-regulated
Down-regulated
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Upset & Venn Plot
Reset
1. Select Plot
Upset
Venn
2. Select condition from the plot (optional).
Generate Plots
Condition Legend
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UpSet Plot
Instructions
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Venn Plot
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P-Value Threshold
Significant Only
All
Functional Enrichment
Gene Ontology Function Analysis
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Pathway Analysis
KEGG Pathway Analysis
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Pathview Analysis
Pathview Results
Pathview Viewer
Info
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Selected IDs
Download PNG
Reactome Pathway Analysis
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Reactome Foam Visualization
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Network
GENIE3 Gene Regulatory Network
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Protein Protein Interaction Network
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PPI Score Selection
Border Legend
2D Volcano
log2_fold_change
Significance
Color Selection
Downregulated
red
blue
green
pink
NotSignificant
red
blue
green
pink
Significant
red
blue
green
pink
Upregulated
red
blue
green
pink
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